Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Mir7654-201ENSMUST00000185082 70 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Ighv1-51-201ENSMUST00000192903 354 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm43433-201ENSMUST00000196573 481 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.4□□□□□ -0.42
Lmx1bO88609 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Lmx1bO88609 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Lmx1bO88609 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Lmx1bO88609 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Lmx1bO88609 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm27701-201ENSMUST00000184498 110 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm43094-201ENSMUST00000196549 921 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Gm8131-201ENSMUST00000213783 1570 ntBASIC12.39□□□□□ -0.43
Lmx1bO88609 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Lmx1bO88609 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Lmx1bO88609 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC12.38□□□□□ -0.43
Lmx1bO88609 Gm15806-201ENSMUST00000120696 955 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.38□□□□□ -0.43
Lmx1bO88609 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.38□□□□□ -0.43
Lmx1bO88609 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Lmx1bO88609 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms