Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Hmgb3O54879 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC11.31□□□□□ -0.6
Hmgb3O54879 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Gm10305-201ENSMUST00000195331 2475 ntBASIC11.3□□□□□ -0.6
Hmgb3O54879 Armc9-201ENSMUST00000027434 5127 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Tardbp-206ENSMUST00000105702 6425 ntTSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC11.3□□□□□ -0.6
Hmgb3O54879 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Mir7071-201ENSMUST00000184847 69 ntBASIC11.3□□□□□ -0.6
Hmgb3O54879 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Mlh3-202ENSMUST00000166821 5420 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Bmp3-203ENSMUST00000200388 6609 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Hmgb3O54879 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC11.3□□□□□ -0.6
Hmgb3O54879 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Bcl9l-203ENSMUST00000218183 6771 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Gm42427-201ENSMUST00000200473 5292 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 AC117194.1-201ENSMUST00000224847 3002 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Gm6376-201ENSMUST00000209407 580 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Gm10154-201ENSMUST00000084445 354 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.29□□□□□ -0.6
Hmgb3O54879 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Hmgb3O54879 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Myh9-201ENSMUST00000016771 7433 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Hmgb3O54879 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 59.4 ms