Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Chd3B1AR17 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Chd3B1AR17 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.36□□□□□ -0.27
Chd3B1AR17 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Chd3B1AR17 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gm11190-201ENSMUST00000132487 3414 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.35□□□□□ -0.27
Chd3B1AR17 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gm42442-201ENSMUST00000197951 1133 ntBASIC13.35□□□□□ -0.27
Chd3B1AR17 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.35□□□□□ -0.27
Chd3B1AR17 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.35□□□□□ -0.27
Chd3B1AR17 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Chd3B1AR17 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 AC167013.2-201ENSMUST00000228520 2684 ntBASIC13.34□□□□□ -0.27
Chd3B1AR17 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Snora78-201ENSMUST00000158630 128 ntBASIC13.34□□□□□ -0.27
Chd3B1AR17 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm37748-201ENSMUST00000194379 1140 ntBASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm38223-201ENSMUST00000194484 695 ntBASIC13.34□□□□□ -0.27
Chd3B1AR17 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm24447-201ENSMUST00000083977 338 ntBASIC13.34□□□□□ -0.27
Chd3B1AR17 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Chd3B1AR17 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Chd3B1AR17 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Chd3B1AR17 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms