Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Trim3Q9R1R2 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Arid3a-201ENSMUST00000019708 5361 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Trim3Q9R1R2 Gm12626-201ENSMUST00000117339 1983 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm12623-201ENSMUST00000119849 1983 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm12020-201ENSMUST00000119030 2042 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm15957-201ENSMUST00000118893 974 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm43703-201ENSMUST00000200523 763 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Gm9229-201ENSMUST00000222777 126 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 AC121804.3-201ENSMUST00000223420 295 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 AC126549.2-201ENSMUST00000223997 1976 ntBASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Trim3Q9R1R2 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Gm15487-201ENSMUST00000122373 465 ntBASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Cd63-ps-201ENSMUST00000145417 875 ntBASIC12.89□□□□□ -0.35
Trim3Q9R1R2 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Trim3Q9R1R2 Gm3436-201ENSMUST00000179930 840 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 75.8 ms