Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC14.41□□□□□ -0.1
Ddx56Q9D0R4 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm27838-201ENSMUST00000184829 128 ntBASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Acot6-202ENSMUST00000222921 3622 ntBASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Ddx56Q9D0R4 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
Ddx56Q9D0R4 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.11
Ddx56Q9D0R4 Matn2-206ENSMUST00000228570 2798 ntBASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Gm17795-201ENSMUST00000214505 757 ntBASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 AC165157.4-201ENSMUST00000220587 139 ntBASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Gm20445-201ENSMUST00000061905 565 ntBASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Ddx56Q9D0R4 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
Ddx56Q9D0R4 Gm27772-201ENSMUST00000184900 187 ntBASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 55.7 ms