Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Mir698-201ENSMUST00000102164 109 ntBASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Gm31326-201ENSMUST00000191856 1048 ntBASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Matn2-206ENSMUST00000228570 2798 ntBASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Gm8131-201ENSMUST00000213783 1570 ntBASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Gm10729-202ENSMUST00000193403 1375 ntBASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Gm6266-201ENSMUST00000203844 806 ntBASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Gm18624-201ENSMUST00000220966 658 ntBASIC15.35■□□□□ 0.05
Ushbp1Q8R370 AC124510.1-201ENSMUST00000222659 583 ntTSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Ushbp1Q8R370 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Gm7820-201ENSMUST00000121012 1052 ntBASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Gm21854-201ENSMUST00000179901 471 ntBASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Mir6392-201ENSMUST00000184924 108 ntBASIC15.34■□□□□ 0.05
Ushbp1Q8R370 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 AC153962.4-201ENSMUST00000217878 242 ntBASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.34■□□□□ 0.05
Ushbp1Q8R370 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ushbp1Q8R370 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Ushbp1Q8R370 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Ushbp1Q8R370 Gm18244-201ENSMUST00000219747 1566 ntBASIC15.33■□□□□ 0.05
Ushbp1Q8R370 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
Ushbp1Q8R370 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm15393-201ENSMUST00000120499 219 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Gm4971-201ENSMUST00000205991 1108 ntBASIC15.33■□□□□ 0.04
Ushbp1Q8R370 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Ushbp1Q8R370 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms