Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC19.21■□□□□ 0.67
Usp47Q8BY87 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Mir7085-201ENSMUST00000184353 66 ntBASIC19.21■□□□□ 0.67
Usp47Q8BY87 Gm29127-201ENSMUST00000188304 517 ntBASIC19.21■□□□□ 0.67
Usp47Q8BY87 Gm42442-201ENSMUST00000197951 1133 ntBASIC19.21■□□□□ 0.67
Usp47Q8BY87 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Usp47Q8BY87 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Usp47Q8BY87 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gm8213-201ENSMUST00000118191 441 ntBASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Abhd6-203ENSMUST00000225234 1958 ntBASIC19.2■□□□□ 0.66
Usp47Q8BY87 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 AC114008.2-201ENSMUST00000227699 1347 ntBASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gm45338-207ENSMUST00000211499 1405 ntTSL 5 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Tmed9-203ENSMUST00000224741 1450 ntBASIC19.2■□□□□ 0.66
Usp47Q8BY87 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gm43273-201ENSMUST00000199649 2594 ntBASIC19.2■□□□□ 0.66
Usp47Q8BY87 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Usp47Q8BY87 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Gm15544-201ENSMUST00000118776 1531 ntBASIC19.19■□□□□ 0.66
Usp47Q8BY87 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Gm24644-201ENSMUST00000157114 139 ntBASIC19.19■□□□□ 0.66
Usp47Q8BY87 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC19.19■□□□□ 0.66
Usp47Q8BY87 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Gm44064-201ENSMUST00000204964 1087 ntBASIC19.19■□□□□ 0.66
Usp47Q8BY87 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Usp47Q8BY87 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Usp47Q8BY87 Gm12500-202ENSMUST00000186471 2428 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms