Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp40Q8BWR4 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm15198-201ENSMUST00000117283 177 ntBASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm2824-203ENSMUST00000226189 1228 ntBASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 4833439L19Rik-201ENSMUST00000026989 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Gm42853-201ENSMUST00000201273 1387 ntBASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp40Q8BWR4 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Gm37922-201ENSMUST00000195596 455 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 AC159896.2-201ENSMUST00000214753 269 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 AC154319.1-201ENSMUST00000216330 312 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Gm19309-201ENSMUST00000218295 205 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 AL589735.1-201ENSMUST00000224353 270 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 CU024892.2-201ENSMUST00000224608 832 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 AC139350.1-201ENSMUST00000227064 1594 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Gm11661-201ENSMUST00000121761 1327 ntBASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp40Q8BWR4 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm42872-201ENSMUST00000200026 1967 ntBASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm22018-201ENSMUST00000104357 131 ntBASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm11618-201ENSMUST00000117946 267 ntBASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Gm12846-201ENSMUST00000120431 1373 ntBASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp40Q8BWR4 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
Usp40Q8BWR4 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
Usp40Q8BWR4 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp40Q8BWR4 Gm45684-201ENSMUST00000210244 1571 ntBASIC18.64■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms