Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Usf1Q61069 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Gm25261-201ENSMUST00000157416 134 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Gm16379-201ENSMUST00000161469 348 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Usf1Q61069 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm8762-201ENSMUST00000193486 339 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.43□□□□□ -0.42
Usf1Q61069 Mettl6-204ENSMUST00000227595 1027 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Usf1Q61069 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm38058-201ENSMUST00000194323 4368 ntBASIC12.43□□□□□ -0.42
Usf1Q61069 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC12.43□□□□□ -0.42
Usf1Q61069 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Usf1Q61069 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm8706-201ENSMUST00000197372 1491 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm15770-201ENSMUST00000117498 584 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.42□□□□□ -0.42
Usf1Q61069 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC12.42□□□□□ -0.42
Usf1Q61069 1600014C23Rik-201ENSMUST00000178179 518 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm42929-201ENSMUST00000198374 1286 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Usf1Q61069 Gm10146-201ENSMUST00000072739 309 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 Gm16372-201ENSMUST00000073088 450 ntBASIC12.42□□□□□ -0.42
Usf1Q61069 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC12.42□□□□□ -0.42
Usf1Q61069 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Usf1Q61069 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC12.42□□□□□ -0.42
Usf1Q61069 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Ksr1-207ENSMUST00000226282 5260 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Gm6203-201ENSMUST00000209575 1342 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Usf1Q61069 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Usf1Q61069 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Usf1Q61069 Gm11618-201ENSMUST00000117946 267 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Gm14381-201ENSMUST00000122105 414 ntBASIC12.41□□□□□ -0.42
Usf1Q61069 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC12.41□□□□□ -0.42
Usf1Q61069 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms