Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Upf3bQ3ULL6 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm27772-201ENSMUST00000184900 187 ntBASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm2423-201ENSMUST00000074863 733 ntBASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.66□□□□□ -0.06
Upf3bQ3ULL6 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Ldb3-207ENSMUST00000227819 1499 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm5866-201ENSMUST00000177881 973 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm5279-201ENSMUST00000199575 745 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm18934-201ENSMUST00000216671 1044 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Upf3bQ3ULL6 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Upf3bQ3ULL6 Gm37133-201ENSMUST00000192705 1922 ntBASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Upf3bQ3ULL6 Gm38037-201ENSMUST00000192600 1624 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms