Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm37922-201ENSMUST00000195596 455 ntBASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm37008-201ENSMUST00000195712 319 ntBASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 AC133598.1-201ENSMUST00000224327 660 ntBASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm17383-201ENSMUST00000078739 1041 ntBASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC14.35□□□□□ -0.11
Upf3aQ3ULJ3 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm14723-201ENSMUST00000118686 215 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm13369-201ENSMUST00000119442 987 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Mir8109-201ENSMUST00000184375 117 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm43118-201ENSMUST00000199149 775 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm10268-201ENSMUST00000085340 555 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Upf3aQ3ULJ3 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Upf3aQ3ULJ3 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Upf3aQ3ULJ3 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms