Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Limch1Q3UH68 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Ighv1-51-201ENSMUST00000192903 354 ntBASIC16.12■□□□□ 0.17
Limch1Q3UH68 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm45384-201ENSMUST00000210451 277 ntBASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm45668-201ENSMUST00000211271 493 ntBASIC16.12■□□□□ 0.17
Limch1Q3UH68 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.12■□□□□ 0.17
Limch1Q3UH68 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm37691-201ENSMUST00000192147 2573 ntBASIC16.12■□□□□ 0.17
Limch1Q3UH68 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Limch1Q3UH68 Gm8337-201ENSMUST00000187358 1938 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 AC153872.1-201ENSMUST00000199539 128 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Cdk7-205ENSMUST00000225990 1159 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Gm15823-201ENSMUST00000064305 670 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.11■□□□□ 0.17
Limch1Q3UH68 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Limch1Q3UH68 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm11478-201ENSMUST00000117851 599 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm7820-201ENSMUST00000121012 1052 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm12138-201ENSMUST00000122180 951 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm12091-201ENSMUST00000146791 830 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm21854-201ENSMUST00000179901 471 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm21470-201ENSMUST00000187680 696 ntBASIC16.1■□□□□ 0.17
Limch1Q3UH68 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC16.1■□□□□ 0.17
Limch1Q3UH68 Gm9908-201ENSMUST00000211534 448 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 75.4 ms