Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm40466-201ENSMUST00000212174 422 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm44981-201ENSMUST00000205549 1943 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Gm44645-201ENSMUST00000205492 1653 ntBASIC11.81□□□□□ -0.52
Nkx3-1P97436 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Nkx3-1P97436 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gm18473-201ENSMUST00000220543 868 ntBASIC11.8□□□□□ -0.52
Nkx3-1P97436 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gm43399-201ENSMUST00000202546 2374 ntBASIC11.8□□□□□ -0.52
Nkx3-1P97436 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gm43697-201ENSMUST00000199637 2581 ntBASIC11.8□□□□□ -0.52
Nkx3-1P97436 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC11.8□□□□□ -0.52
Nkx3-1P97436 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Nkx3-1P97436 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Gm22331-201ENSMUST00000158066 136 ntBASIC11.79□□□□□ -0.52
Nkx3-1P97436 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nkx3-1P97436 Gm24447-201ENSMUST00000083977 338 ntBASIC11.79□□□□□ -0.52
Nkx3-1P97436 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms