Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
RaraP11416 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
RaraP11416 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
RaraP11416 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC14.82□□□□□ -0.04
RaraP11416 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC14.82□□□□□ -0.04
RaraP11416 Gm11557-201ENSMUST00000120200 1008 ntBASIC14.82□□□□□ -0.04
RaraP11416 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
RaraP11416 Gm8927-201ENSMUST00000181978 981 ntBASIC14.82□□□□□ -0.04
RaraP11416 Gm5312-201ENSMUST00000203728 547 ntBASIC14.82□□□□□ -0.04
RaraP11416 AC132104.2-201ENSMUST00000215011 266 ntBASIC14.82□□□□□ -0.04
RaraP11416 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.82□□□□□ -0.04
RaraP11416 AC166997.1-201ENSMUST00000225122 572 ntBASIC14.82□□□□□ -0.04
RaraP11416 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Gm15823-201ENSMUST00000064305 670 ntBASIC14.82□□□□□ -0.04
RaraP11416 Gm3222-201ENSMUST00000071282 990 ntBASIC14.82□□□□□ -0.04
RaraP11416 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.82□□□□□ -0.04
RaraP11416 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 AC238940.1-201ENSMUST00000225106 1858 ntBASIC14.82□□□□□ -0.04
RaraP11416 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RaraP11416 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
RaraP11416 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC14.81□□□□□ -0.04
RaraP11416 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
RaraP11416 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RaraP11416 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Gm7336-201ENSMUST00000107041 1232 ntBASIC14.81□□□□□ -0.04
RaraP11416 Gm8410-201ENSMUST00000117225 605 ntBASIC14.81□□□□□ -0.04
RaraP11416 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.81□□□□□ -0.04
RaraP11416 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
RaraP11416 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Gm18041-201ENSMUST00000218210 618 ntBASIC14.81□□□□□ -0.04
RaraP11416 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RaraP11416 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.81□□□□□ -0.04
RaraP11416 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
RaraP11416 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RaraP11416 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.8□□□□□ -0.04
RaraP11416 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.8□□□□□ -0.04
RaraP11416 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RaraP11416 Gm15653-201ENSMUST00000119247 907 ntBASIC14.8□□□□□ -0.04
RaraP11416 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC14.8□□□□□ -0.04
RaraP11416 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC14.8□□□□□ -0.04
RaraP11416 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC14.8□□□□□ -0.04
RaraP11416 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.8□□□□□ -0.04
RaraP11416 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.8□□□□□ -0.04
RaraP11416 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.8□□□□□ -0.04
RaraP11416 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms