Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Gm4419-202ENSMUST00000226239 1431 ntBASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Col13a1Q9R1N9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.29■□□□□ 0.52
Col13a1Q9R1N9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Col13a1Q9R1N9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Col13a1Q9R1N9 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
Col13a1Q9R1N9 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Flvcr1-202ENSMUST00000191946 1216 ntBASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm45417-201ENSMUST00000209533 758 ntBASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col13a1Q9R1N9 Gm12821-201ENSMUST00000120022 600 ntBASIC18.24■□□□□ 0.51
Col13a1Q9R1N9 Gm27454-201ENSMUST00000185090 204 ntBASIC18.24■□□□□ 0.51
Col13a1Q9R1N9 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col13a1Q9R1N9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Col13a1Q9R1N9 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col13a1Q9R1N9 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col13a1Q9R1N9 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC18.22■□□□□ 0.51
Col13a1Q9R1N9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.22■□□□□ 0.51
Col13a1Q9R1N9 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col13a1Q9R1N9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col13a1Q9R1N9 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col13a1Q9R1N9 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Col13a1Q9R1N9 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col13a1Q9R1N9 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Col13a1Q9R1N9 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Col13a1Q9R1N9 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Col13a1Q9R1N9 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC18.18■□□□□ 0.5
Col13a1Q9R1N9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Col13a1Q9R1N9 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.18■□□□□ 0.5
Col13a1Q9R1N9 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.18■□□□□ 0.5
Col13a1Q9R1N9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms