Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC20.95■□□□□ 0.94
Msh4Q99MT2 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh4Q99MT2 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Msh4Q99MT2 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh4Q99MT2 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Msh4Q99MT2 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Msh4Q99MT2 Gm7199-201ENSMUST00000118327 1485 ntBASIC20.93■□□□□ 0.94
Msh4Q99MT2 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh4Q99MT2 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh4Q99MT2 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh4Q99MT2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh4Q99MT2 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Msh4Q99MT2 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Msh4Q99MT2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Msh4Q99MT2 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Msh4Q99MT2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Msh4Q99MT2 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Msh4Q99MT2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Msh4Q99MT2 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Msh4Q99MT2 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Msh4Q99MT2 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh4Q99MT2 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh4Q99MT2 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Msh4Q99MT2 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.88■□□□□ 0.93
Msh4Q99MT2 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.88■□□□□ 0.93
Msh4Q99MT2 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.88■□□□□ 0.93
Msh4Q99MT2 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Msh4Q99MT2 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Msh4Q99MT2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh4Q99MT2 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.85■□□□□ 0.93
Msh4Q99MT2 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh4Q99MT2 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Msh4Q99MT2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Msh4Q99MT2 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Msh4Q99MT2 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
Msh4Q99MT2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh4Q99MT2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Msh4Q99MT2 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh4Q99MT2 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.83■□□□□ 0.93
Msh4Q99MT2 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh4Q99MT2 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh4Q99MT2 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Msh4Q99MT2 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Msh4Q99MT2 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.83■□□□□ 0.92
Msh4Q99MT2 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Gm26766-202ENSMUST00000227544 2347 ntBASIC20.82■□□□□ 0.92
Msh4Q99MT2 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh4Q99MT2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh4Q99MT2 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh4Q99MT2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC20.81■□□□□ 0.92
Msh4Q99MT2 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh4Q99MT2 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh4Q99MT2 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Msh4Q99MT2 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh4Q99MT2 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms