Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC25.4■■□□□ 1.66
Limch1Q3UH68 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Limch1Q3UH68 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Limch1Q3UH68 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
Limch1Q3UH68 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Limch1Q3UH68 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Limch1Q3UH68 Gm15546-201ENSMUST00000122095 826 ntBASIC25.38■■□□□ 1.65
Limch1Q3UH68 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Limch1Q3UH68 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
Limch1Q3UH68 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC25.37■■□□□ 1.65
Limch1Q3UH68 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
Limch1Q3UH68 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Limch1Q3UH68 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Limch1Q3UH68 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
Limch1Q3UH68 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Limch1Q3UH68 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Limch1Q3UH68 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC25.36■■□□□ 1.65
Limch1Q3UH68 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Limch1Q3UH68 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
Limch1Q3UH68 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
Limch1Q3UH68 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Limch1Q3UH68 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Limch1Q3UH68 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Limch1Q3UH68 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Limch1Q3UH68 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Limch1Q3UH68 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
Limch1Q3UH68 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Limch1Q3UH68 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC25.32■■□□□ 1.64
Limch1Q3UH68 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Limch1Q3UH68 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Limch1Q3UH68 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
Limch1Q3UH68 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
Limch1Q3UH68 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
Limch1Q3UH68 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
Limch1Q3UH68 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Limch1Q3UH68 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Limch1Q3UH68 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Limch1Q3UH68 Gm5522-201ENSMUST00000189483 1242 ntBASIC25.29■■□□□ 1.64
Limch1Q3UH68 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Limch1Q3UH68 AC115037.1-201ENSMUST00000223391 2173 ntBASIC25.29■■□□□ 1.64
Limch1Q3UH68 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Limch1Q3UH68 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Limch1Q3UH68 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Limch1Q3UH68 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Limch1Q3UH68 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Limch1Q3UH68 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
Limch1Q3UH68 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC25.27■■□□□ 1.64
Limch1Q3UH68 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC25.27■■□□□ 1.64
Limch1Q3UH68 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Limch1Q3UH68 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Limch1Q3UH68 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Limch1Q3UH68 Gm26766-202ENSMUST00000227544 2347 ntBASIC25.25■■□□□ 1.63
Limch1Q3UH68 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Limch1Q3UH68 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC25.25■■□□□ 1.63
Limch1Q3UH68 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Limch1Q3UH68 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Gm43592-201ENSMUST00000196922 1165 ntBASIC25.24■■□□□ 1.63
Limch1Q3UH68 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC25.24■■□□□ 1.63
Limch1Q3UH68 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Limch1Q3UH68 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC25.23■■□□□ 1.63
Limch1Q3UH68 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Limch1Q3UH68 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Limch1Q3UH68 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Limch1Q3UH68 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 AC153962.1-201ENSMUST00000218530 1948 ntBASIC25.22■■□□□ 1.63
Limch1Q3UH68 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
Limch1Q3UH68 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Limch1Q3UH68 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms