Protein–RNA interactions for Protein: P29595

Nedd8, NEDD8, mousemouse

Predictions only

Length 81 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nedd8P29595 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nedd8P29595 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
Nedd8P29595 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Nedd8P29595 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20■□□□□ 0.79
Nedd8P29595 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nedd8P29595 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Nedd8P29595 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nedd8P29595 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
Nedd8P29595 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nedd8P29595 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nedd8P29595 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.99■□□□□ 0.79
Nedd8P29595 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.99■□□□□ 0.79
Nedd8P29595 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.98■□□□□ 0.79
Nedd8P29595 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Nedd8P29595 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Nedd8P29595 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nedd8P29595 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nedd8P29595 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Nedd8P29595 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.97■□□□□ 0.79
Nedd8P29595 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Nedd8P29595 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Nedd8P29595 Iqck-206ENSMUST00000208658 2891 ntBASIC19.97■□□□□ 0.79
Nedd8P29595 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Nedd8P29595 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Nedd8P29595 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Nedd8P29595 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Nedd8P29595 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Nedd8P29595 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.96■□□□□ 0.79
Nedd8P29595 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Nedd8P29595 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Nedd8P29595 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Nedd8P29595 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Nedd8P29595 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.95■□□□□ 0.78
Nedd8P29595 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Nedd8P29595 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Nedd8P29595 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nedd8P29595 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nedd8P29595 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nedd8P29595 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nedd8P29595 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.94■□□□□ 0.78
Nedd8P29595 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Nedd8P29595 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC19.93■□□□□ 0.78
Nedd8P29595 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
Nedd8P29595 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Nedd8P29595 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Nedd8P29595 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Nedd8P29595 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC19.92■□□□□ 0.78
Nedd8P29595 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nedd8P29595 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nedd8P29595 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nedd8P29595 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nedd8P29595 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Nedd8P29595 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC19.91■□□□□ 0.78
Nedd8P29595 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Nedd8P29595 Gm28731-201ENSMUST00000185564 1569 ntBASIC19.91■□□□□ 0.78
Nedd8P29595 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nedd8P29595 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nedd8P29595 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nedd8P29595 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nedd8P29595 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nedd8P29595 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.78
Nedd8P29595 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC19.89■□□□□ 0.77
Nedd8P29595 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Nedd8P29595 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nedd8P29595 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Nedd8P29595 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC19.88■□□□□ 0.77
Nedd8P29595 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nedd8P29595 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nedd8P29595 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nedd8P29595 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
Nedd8P29595 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nedd8P29595 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Nedd8P29595 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Nedd8P29595 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Nedd8P29595 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nedd8P29595 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nedd8P29595 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Nedd8P29595 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nedd8P29595 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nedd8P29595 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nedd8P29595 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 87.6 ms