Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Gm28182-201ENSMUST00000188354 2477 ntBASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Cdc40Q9DC48 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gm14127-201ENSMUST00000117906 678 ntBASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gm15393-201ENSMUST00000120499 219 ntBASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gm28760-201ENSMUST00000185995 736 ntBASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gm8515-201ENSMUST00000194852 576 ntBASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Cdc40Q9DC48 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.75□□□□□ -0.37
Cdc40Q9DC48 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Gm45667-201ENSMUST00000210380 1316 ntBASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Hist1h2al-201ENSMUST00000091708 339 ntBASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Cdc40Q9DC48 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Cdc40Q9DC48 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms