Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cstf1Q99LC2 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Camk2g-217ENSMUST00000226630 1937 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Mir877-201ENSMUST00000104738 85 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm14730-201ENSMUST00000122378 1045 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm42627-201ENSMUST00000197347 224 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm7498-201ENSMUST00000203282 1084 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Gm9176-201ENSMUST00000219955 1120 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 AC134335.2-201ENSMUST00000227660 440 ntBASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cstf1Q99LC2 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gm26083-201ENSMUST00000157904 193 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gm42550-201ENSMUST00000201553 960 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gm8598-201ENSMUST00000221184 836 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 AC132317.1-201ENSMUST00000227227 962 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Gm44291-201ENSMUST00000203102 2865 ntBASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cstf1Q99LC2 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cstf1Q99LC2 Gm22018-201ENSMUST00000104357 131 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms