Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Ighv1-51-201ENSMUST00000192903 354 ntBASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Gm10766-202ENSMUST00000194123 606 ntBASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Gm9229-201ENSMUST00000222777 126 ntBASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Mir497b-201ENSMUST00000093601 125 ntBASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC15.39■□□□□ 0.05
Ushbp1Q8R370 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Pisd-ps1-201ENSMUST00000119128 1115 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gm15824-201ENSMUST00000119516 955 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gm11918-201ENSMUST00000121660 179 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gm21470-201ENSMUST00000187680 696 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gm9797-201ENSMUST00000052902 613 ntBASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC15.38■□□□□ 0.05
Ushbp1Q8R370 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Gm8337-201ENSMUST00000187358 1938 ntBASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Gm28760-201ENSMUST00000185995 736 ntBASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Ushbp1Q8R370 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Ushbp1Q8R370 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms