Protein–RNA interactions for Protein: Q8K2Z2

Prpf39, Pre-mRNA-processing factor 39, mousemouse

Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf39Q8K2Z2 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gm37015-201ENSMUST00000192763 1521 ntBASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Prpf39Q8K2Z2 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Gm16215-201ENSMUST00000161990 637 ntBASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Prpf39Q8K2Z2 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Gm22189-201ENSMUST00000103822 86 ntBASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Gm28760-201ENSMUST00000185995 736 ntBASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Prpf39Q8K2Z2 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms