Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Gm18905-201ENSMUST00000205454 928 ntBASIC14.16□□□□□ -0.14
Trub1Q8C0D0 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trub1Q8C0D0 Gm6263-201ENSMUST00000120029 1342 ntBASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gm20632-201ENSMUST00000176760 2427 ntBASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Dnajc6-204ENSMUST00000106930 5127 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Trub1Q8C0D0 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Trub1Q8C0D0 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Trub1Q8C0D0 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Mir7684-201ENSMUST00000183858 60 ntBASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Gm29667-201ENSMUST00000190817 490 ntBASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Gm17795-201ENSMUST00000214505 757 ntBASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Trub1Q8C0D0 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trub1Q8C0D0 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms