Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Rnf220Q6PDX6 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Rnf17-202ENSMUST00000223627 2077 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm8749-201ENSMUST00000117737 331 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm13036-201ENSMUST00000117799 748 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gm8584-201ENSMUST00000171982 758 ntBASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Klhl26-201ENSMUST00000066597 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Rnf220Q6PDX6 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Gm13464-201ENSMUST00000119418 935 ntBASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 AC131709.1-201ENSMUST00000224731 1180 ntBASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Rnf220Q6PDX6 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms