Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Tyms-ps-201ENSMUST00000219550 915 ntBASIC17.68■□□□□ 0.42
Trim28Q62318 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC17.68■□□□□ 0.42
Trim28Q62318 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim28Q62318 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim28Q62318 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim28Q62318 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim28Q62318 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.67■□□□□ 0.42
Trim28Q62318 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Gm1335-201ENSMUST00000121653 386 ntBASIC17.67■□□□□ 0.42
Trim28Q62318 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC17.67■□□□□ 0.42
Trim28Q62318 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim28Q62318 Snora73a-201ENSMUST00000082453 205 ntBASIC17.67■□□□□ 0.42
Trim28Q62318 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim28Q62318 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim28Q62318 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Trim28Q62318 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC17.66■□□□□ 0.42
Trim28Q62318 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim28Q62318 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Mir1938-201ENSMUST00000158746 100 ntBASIC17.66■□□□□ 0.42
Trim28Q62318 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC17.66■□□□□ 0.42
Trim28Q62318 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Trim28Q62318 Gm45841-201ENSMUST00000207700 164 ntBASIC17.66■□□□□ 0.42
Trim28Q62318 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim28Q62318 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 AC159649.2-201ENSMUST00000222984 3223 ntBASIC17.66■□□□□ 0.42
Trim28Q62318 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
Trim28Q62318 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim28Q62318 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim28Q62318 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim28Q62318 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim28Q62318 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Gm2639-201ENSMUST00000156881 1297 ntBASIC17.65■□□□□ 0.42
Trim28Q62318 Gm42693-201ENSMUST00000196779 631 ntBASIC17.65■□□□□ 0.42
Trim28Q62318 Gm19309-201ENSMUST00000218295 205 ntBASIC17.65■□□□□ 0.42
Trim28Q62318 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC17.65■□□□□ 0.42
Trim28Q62318 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim28Q62318 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Trim28Q62318 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
Trim28Q62318 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm8706-201ENSMUST00000197372 1491 ntBASIC17.64■□□□□ 0.41
Trim28Q62318 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim28Q62318 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm11978-201ENSMUST00000122315 466 ntBASIC17.64■□□□□ 0.41
Trim28Q62318 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC17.64■□□□□ 0.41
Trim28Q62318 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm10146-201ENSMUST00000072739 309 ntBASIC17.64■□□□□ 0.41
Trim28Q62318 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trim28Q62318 Gm10478-201ENSMUST00000084451 396 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms