Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Higd2a-201ENSMUST00000026986 648 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col17a1Q07563 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Col17a1Q07563 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Col17a1Q07563 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col17a1Q07563 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col17a1Q07563 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col17a1Q07563 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col17a1Q07563 Tsc22d4-204ENSMUST00000110983 1043 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Gm11246-201ENSMUST00000120880 345 ntBASIC20.57■□□□□ 0.88
Col17a1Q07563 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Tmem40-206ENSMUST00000170625 843 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
Col17a1Q07563 Mc5r-201ENSMUST00000172148 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC20.57■□□□□ 0.88
Col17a1Q07563 Zfp655-203ENSMUST00000196069 1150 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC20.57■□□□□ 0.88
Col17a1Q07563 Gm5904-201ENSMUST00000210286 865 ntBASIC20.57■□□□□ 0.88
Col17a1Q07563 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC20.57■□□□□ 0.88
Col17a1Q07563 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Col17a1Q07563 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC20.57■□□□□ 0.88
Col17a1Q07563 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col17a1Q07563 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm24845-201ENSMUST00000158034 109 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm44953-201ENSMUST00000208745 1286 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 AC129219.2-201ENSMUST00000224324 701 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm27528-202ENSMUST00000222916 2012 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Daam2-202ENSMUST00000224595 1926 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm4879-201ENSMUST00000122190 1272 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Hcrtr1-204ENSMUST00000164887 1251 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm5852-201ENSMUST00000194119 1021 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm5542-201ENSMUST00000195485 1089 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 AC159205.5-202ENSMUST00000224849 386 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm5434-202ENSMUST00000222384 1451 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Gm5434-201ENSMUST00000071825 1451 ntBASIC20.56■□□□□ 0.88
Col17a1Q07563 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col17a1Q07563 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 4930465M20Rik-201ENSMUST00000130564 1446 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Col17a1Q07563 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC20.55■□□□□ 0.88
Col17a1Q07563 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Acot13-201ENSMUST00000006900 721 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col17a1Q07563 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms