Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC20.73■□□□□ 0.91
Cux1P53564 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC20.73■□□□□ 0.91
Cux1P53564 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC20.73■□□□□ 0.91
Cux1P53564 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 AC166051.1-201ENSMUST00000214313 210 ntBASIC20.73■□□□□ 0.91
Cux1P53564 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC20.73■□□□□ 0.91
Cux1P53564 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cux1P53564 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Tmed9-203ENSMUST00000224741 1450 ntBASIC20.72■□□□□ 0.91
Cux1P53564 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Cux1P53564 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC20.72■□□□□ 0.91
Cux1P53564 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cux1P53564 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC20.72■□□□□ 0.91
Cux1P53564 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cux1P53564 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Cux1P53564 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cux1P53564 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Cux1P53564 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Cux1P53564 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC20.71■□□□□ 0.91
Cux1P53564 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC20.71■□□□□ 0.91
Cux1P53564 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 CT573034.1-201ENSMUST00000222983 313 ntBASIC20.71■□□□□ 0.91
Cux1P53564 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC20.71■□□□□ 0.91
Cux1P53564 Gm43273-201ENSMUST00000199649 2594 ntBASIC20.71■□□□□ 0.91
Cux1P53564 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cux1P53564 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Cux1P53564 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Cux1P53564 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Cux1P53564 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Cux1P53564 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
Cux1P53564 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC20.7■□□□□ 0.9
Cux1P53564 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC20.7■□□□□ 0.9
Cux1P53564 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
Cux1P53564 Gm8738-201ENSMUST00000172606 329 ntBASIC20.7■□□□□ 0.9
Cux1P53564 Mir3547-201ENSMUST00000175461 88 ntBASIC20.7■□□□□ 0.9
Cux1P53564 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC20.7■□□□□ 0.9
Cux1P53564 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Gm45186-201ENSMUST00000206874 478 ntBASIC20.7■□□□□ 0.9
Cux1P53564 AC155637.1-201ENSMUST00000218560 636 ntBASIC20.7■□□□□ 0.9
Cux1P53564 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Cux1P53564 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC20.7■□□□□ 0.9
Cux1P53564 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Cux1P53564 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cux1P53564 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Cux1P53564 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms