Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Gm10305-201ENSMUST00000195331 2475 ntBASIC16.39■□□□□ 0.21
Rfx1P48377 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Rfx1P48377 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Rfx1P48377 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Gm43423-201ENSMUST00000198390 2094 ntBASIC16.38■□□□□ 0.21
Rfx1P48377 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Gm2810-201ENSMUST00000118681 990 ntBASIC16.38■□□□□ 0.21
Rfx1P48377 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC16.38■□□□□ 0.21
Rfx1P48377 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC16.38■□□□□ 0.21
Rfx1P48377 Gm26787-201ENSMUST00000180474 608 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.38■□□□□ 0.21
Rfx1P48377 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC16.38■□□□□ 0.21
Rfx1P48377 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC16.38■□□□□ 0.21
Rfx1P48377 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Rfx1P48377 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Rfx1P48377 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
Rfx1P48377 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC16.37■□□□□ 0.21
Rfx1P48377 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Rfx1P48377 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.37■□□□□ 0.21
Rfx1P48377 Gm12260-201ENSMUST00000122447 411 ntBASIC16.37■□□□□ 0.21
Rfx1P48377 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Mzt1-203ENSMUST00000227948 952 ntBASIC16.37■□□□□ 0.21
Rfx1P48377 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Rfx1P48377 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.37■□□□□ 0.21
Rfx1P48377 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Rfx1P48377 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Rfx1P48377 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Rfx1P48377 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
Rfx1P48377 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Rfx1P48377 Gm1401-201ENSMUST00000122048 772 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Rfx1P48377 Gm29741-201ENSMUST00000192667 421 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Gm38225-201ENSMUST00000194001 393 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Gm18057-201ENSMUST00000208220 503 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC16.36■□□□□ 0.21
Rfx1P48377 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Rfx1P48377 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Rfx1P48377 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC16.36■□□□□ 0.21
Rfx1P48377 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Rfx1P48377 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Rfx1P48377 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms