Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cdx1P18111 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cdx1P18111 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC11.1□□□□□ -0.63
Cdx1P18111 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.1□□□□□ -0.63
Cdx1P18111 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Cdx1P18111 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC11.1□□□□□ -0.63
Cdx1P18111 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm7556-201ENSMUST00000201178 1084 ntBASIC11.1□□□□□ -0.63
Cdx1P18111 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm45612-201ENSMUST00000211320 160 ntBASIC11.1□□□□□ -0.63
Cdx1P18111 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC11.1□□□□□ -0.63
Cdx1P18111 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Cdx1P18111 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cdx1P18111 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Cdx1P18111 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Cdx1P18111 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Gm15427-201ENSMUST00000117288 531 ntBASIC11.09□□□□□ -0.63
Cdx1P18111 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC11.09□□□□□ -0.63
Cdx1P18111 Gm17968-201ENSMUST00000194902 784 ntBASIC11.09□□□□□ -0.63
Cdx1P18111 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC11.09□□□□□ -0.63
Cdx1P18111 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Cdx1P18111 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC11.09□□□□□ -0.63
Cdx1P18111 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.09□□□□□ -0.63
Cdx1P18111 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Cdx1P18111 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Cdx1P18111 Adamts20-204ENSMUST00000155907 6886 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Cdx1P18111 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Cdx1P18111 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms