Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC14.85□□□□□ -0.03
RaraP11416 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Gm37861-201ENSMUST00000193534 2869 ntBASIC14.85□□□□□ -0.03
RaraP11416 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.85□□□□□ -0.03
RaraP11416 Mir449b-201ENSMUST00000104833 80 ntBASIC14.85□□□□□ -0.03
RaraP11416 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC14.85□□□□□ -0.03
RaraP11416 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC14.85□□□□□ -0.03
RaraP11416 Gm27533-201ENSMUST00000183800 152 ntBASIC14.85□□□□□ -0.03
RaraP11416 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC14.85□□□□□ -0.03
RaraP11416 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 AC140397.2-201ENSMUST00000224213 834 ntBASIC14.85□□□□□ -0.03
RaraP11416 AC156016.3-201ENSMUST00000228623 344 ntBASIC14.85□□□□□ -0.03
RaraP11416 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
RaraP11416 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Gm37844-201ENSMUST00000192473 4097 ntBASIC14.85□□□□□ -0.03
RaraP11416 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RaraP11416 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
RaraP11416 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
RaraP11416 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
RaraP11416 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
RaraP11416 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC14.84□□□□□ -0.03
RaraP11416 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Gm27622-201ENSMUST00000183779 60 ntBASIC14.84□□□□□ -0.03
RaraP11416 Gm21470-201ENSMUST00000187680 696 ntBASIC14.84□□□□□ -0.03
RaraP11416 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
RaraP11416 AC151286.1-201ENSMUST00000198489 145 ntBASIC14.84□□□□□ -0.03
RaraP11416 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.84□□□□□ -0.03
RaraP11416 Gm7774-201ENSMUST00000200064 533 ntBASIC14.84□□□□□ -0.03
RaraP11416 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
RaraP11416 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
RaraP11416 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
RaraP11416 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
RaraP11416 Gm38577-201ENSMUST00000221531 4545 ntBASIC14.83□□□□□ -0.04
RaraP11416 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm10327-201ENSMUST00000105222 1002 ntBASIC14.83□□□□□ -0.04
RaraP11416 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
RaraP11416 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.83□□□□□ -0.04
RaraP11416 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.83□□□□□ -0.04
RaraP11416 Gm5069-202ENSMUST00000192714 1011 ntBASIC14.83□□□□□ -0.04
RaraP11416 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.83□□□□□ -0.04
RaraP11416 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
RaraP11416 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
RaraP11416 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
RaraP11416 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
RaraP11416 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
RaraP11416 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms