Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Col3a1P08121 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Col3a1P08121 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Col3a1P08121 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC16.17■□□□□ 0.18
Col3a1P08121 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Gm16479-201ENSMUST00000121706 932 ntBASIC16.17■□□□□ 0.18
Col3a1P08121 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC16.17■□□□□ 0.18
Col3a1P08121 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col3a1P08121 n-R5s195-201ENSMUST00000082891 119 ntBASIC16.17■□□□□ 0.18
Col3a1P08121 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Col3a1P08121 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Col3a1P08121 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col3a1P08121 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Col3a1P08121 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col3a1P08121 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Gm14608-201ENSMUST00000120030 1553 ntBASIC16.16■□□□□ 0.18
Col3a1P08121 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC16.16■□□□□ 0.18
Col3a1P08121 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC16.16■□□□□ 0.18
Col3a1P08121 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.16■□□□□ 0.18
Col3a1P08121 Gm28693-202ENSMUST00000190758 331 ntBASIC16.16■□□□□ 0.18
Col3a1P08121 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Gm37133-201ENSMUST00000192705 1922 ntBASIC16.16■□□□□ 0.18
Col3a1P08121 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC16.16■□□□□ 0.18
Col3a1P08121 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC16.16■□□□□ 0.18
Col3a1P08121 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Col3a1P08121 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col3a1P08121 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Col3a1P08121 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Gm12500-202ENSMUST00000186471 2428 ntBASIC16.15■□□□□ 0.18
Col3a1P08121 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col3a1P08121 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
Col3a1P08121 Gm4959-201ENSMUST00000197271 1044 ntBASIC16.15■□□□□ 0.18
Col3a1P08121 AC134254.1-201ENSMUST00000221362 167 ntBASIC16.15■□□□□ 0.18
Col3a1P08121 CT485787.1-201ENSMUST00000225617 968 ntBASIC16.15■□□□□ 0.18
Col3a1P08121 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col3a1P08121 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Tmed9-203ENSMUST00000224741 1450 ntBASIC16.15■□□□□ 0.18
Col3a1P08121 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC16.15■□□□□ 0.18
Col3a1P08121 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.15■□□□□ 0.18
Col3a1P08121 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col3a1P08121 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Col3a1P08121 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col3a1P08121 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
Col3a1P08121 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms