Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.45□□□□□ -0.42
Lmx1bO88609 AC162801.1-201ENSMUST00000220612 198 ntBASIC12.45□□□□□ -0.42
Lmx1bO88609 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.45□□□□□ -0.42
Lmx1bO88609 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Lmx1bO88609 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC12.45□□□□□ -0.42
Lmx1bO88609 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lmx1bO88609 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 AC114543.1-201ENSMUST00000226451 1558 ntBASIC12.44□□□□□ -0.42
Lmx1bO88609 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Gm43568-203ENSMUST00000199116 1270 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC12.44□□□□□ -0.42
Lmx1bO88609 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Lmx1bO88609 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC12.44□□□□□ -0.42
Lmx1bO88609 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm15222-202ENSMUST00000228667 1726 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 AC121801.1-201ENSMUST00000225363 1899 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm15240-201ENSMUST00000118156 720 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Meg3-208ENSMUST00000143847 706 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm8602-201ENSMUST00000184045 607 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm43438-201ENSMUST00000198133 379 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Gm5639-201ENSMUST00000122305 2403 ntBASIC12.43□□□□□ -0.42
Lmx1bO88609 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Lmx1bO88609 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
Lmx1bO88609 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Lmx1bO88609 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Lmx1bO88609 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms