Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Chd3B1AR17 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Bmper-201ENSMUST00000071982 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Mir698-201ENSMUST00000102164 109 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Gm23931-201ENSMUST00000103842 109 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Gm14350-201ENSMUST00000116642 640 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 AC073947.2-201ENSMUST00000215888 1130 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.4□□□□□ -0.26
Chd3B1AR17 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Chd3B1AR17 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Chd3B1AR17 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Chd3B1AR17 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
Chd3B1AR17 Gm13829-201ENSMUST00000119600 138 ntBASIC13.4□□□□□ -0.27
Chd3B1AR17 Gm11425-201ENSMUST00000119608 498 ntBASIC13.4□□□□□ -0.27
Chd3B1AR17 Gm14660-201ENSMUST00000119809 575 ntBASIC13.4□□□□□ -0.27
Chd3B1AR17 Gm15806-201ENSMUST00000120696 955 ntBASIC13.4□□□□□ -0.27
Chd3B1AR17 Rpl12-203ENSMUST00000126610 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Chd3B1AR17 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Chd3B1AR17 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
Chd3B1AR17 Gm9396-201ENSMUST00000076703 567 ntBASIC13.4□□□□□ -0.27
Chd3B1AR17 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Gm16342-201ENSMUST00000124025 1025 ntBASIC13.39□□□□□ -0.27
Chd3B1AR17 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Gm7553-201ENSMUST00000185805 1426 ntBASIC13.39□□□□□ -0.27
Chd3B1AR17 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Chd3B1AR17 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Chd3B1AR17 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Chd3B1AR17 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Chd3B1AR17 Gm18630-201ENSMUST00000222109 1397 ntBASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms