Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Gm6983-201ENSMUST00000214912 628 ntBASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Mmp14-206ENSMUST00000225641 3238 ntBASIC14.87□□□□□ -0.03
Trim54Q9ERP3 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Mup-ps23-201ENSMUST00000118063 630 ntBASIC14.86□□□□□ -0.03
Trim54Q9ERP3 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Gm7561-201ENSMUST00000211203 886 ntBASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Zscan30-202ENSMUST00000224144 1458 ntBASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim54Q9ERP3 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Mir1938-201ENSMUST00000158746 100 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm27847-201ENSMUST00000183711 107 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm27375-201ENSMUST00000183799 107 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm38230-201ENSMUST00000193572 1159 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm6091-201ENSMUST00000098307 165 ntBASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Trim54Q9ERP3 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC14.84□□□□□ -0.03
Trim54Q9ERP3 Gm15371-201ENSMUST00000117057 784 ntBASIC14.84□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms