Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm15653-201ENSMUST00000119247 907 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm29667-201ENSMUST00000190817 490 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm45098-201ENSMUST00000207179 657 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm46209-201ENSMUST00000217912 553 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm6218-201ENSMUST00000219812 628 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Smc1aQ9CU62 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.39■□□□□ 0.05
Smc1aQ9CU62 AL593843.1-201ENSMUST00000195891 145 ntBASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Smc1aQ9CU62 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Smc1aQ9CU62 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Smc1aQ9CU62 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.05
Smc1aQ9CU62 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Smc1aQ9CU62 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Smc1aQ9CU62 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Smc1aQ9CU62 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms