Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Syne4Q8CII8 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Syne4Q8CII8 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC15.48■□□□□ 0.07
Syne4Q8CII8 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Syne4Q8CII8 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
Syne4Q8CII8 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Syne4Q8CII8 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm43579-201ENSMUST00000202387 1307 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm22323-201ENSMUST00000103832 109 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm2991-201ENSMUST00000173338 480 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm6222-202ENSMUST00000182143 629 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm8227-201ENSMUST00000223306 571 ntBASIC15.47■□□□□ 0.07
Syne4Q8CII8 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC15.47■□□□□ 0.07
Syne4Q8CII8 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Syne4Q8CII8 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Gm20632-201ENSMUST00000176760 2427 ntBASIC15.46■□□□□ 0.07
Syne4Q8CII8 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Gm8584-201ENSMUST00000171982 758 ntBASIC15.46■□□□□ 0.07
Syne4Q8CII8 Mir5132-201ENSMUST00000175166 71 ntBASIC15.46■□□□□ 0.07
Syne4Q8CII8 Ighv1-62-201ENSMUST00000193406 350 ntBASIC15.46■□□□□ 0.07
Syne4Q8CII8 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Syne4Q8CII8 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Syne4Q8CII8 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC15.46■□□□□ 0.06
Syne4Q8CII8 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Gm24255-201ENSMUST00000104481 128 ntBASIC15.45■□□□□ 0.06
Syne4Q8CII8 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
Syne4Q8CII8 Gm13886-201ENSMUST00000117876 1183 ntBASIC15.45■□□□□ 0.06
Syne4Q8CII8 Gm14381-201ENSMUST00000122105 414 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms