Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm15770-201ENSMUST00000117498 584 ntBASIC16.19■□□□□ 0.18
Trim56Q80VI1 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm12416-201ENSMUST00000120911 1008 ntBASIC16.19■□□□□ 0.18
Trim56Q80VI1 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm5069-202ENSMUST00000192714 1011 ntBASIC16.19■□□□□ 0.18
Trim56Q80VI1 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 AC140375.2-201ENSMUST00000225283 584 ntBASIC16.19■□□□□ 0.18
Trim56Q80VI1 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trim56Q80VI1 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim56Q80VI1 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm12537-201ENSMUST00000119266 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm12070-201ENSMUST00000119551 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm12671-201ENSMUST00000119978 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm13292-201ENSMUST00000120014 1000 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm12403-201ENSMUST00000121384 959 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm10359-201ENSMUST00000180167 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm12033-201ENSMUST00000180654 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm5559-201ENSMUST00000180755 1002 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm4335-201ENSMUST00000182581 1004 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm2495-201ENSMUST00000191160 466 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gm44719-201ENSMUST00000206404 149 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 AC155252.1-201ENSMUST00000226462 1208 ntBASIC16.17■□□□□ 0.18
Trim56Q80VI1 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim56Q80VI1 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim56Q80VI1 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms