Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scaf4Q6PFF0 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scaf4Q6PFF0 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Scaf4Q6PFF0 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scaf4Q6PFF0 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Scaf4Q6PFF0 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Gm38225-201ENSMUST00000194001 393 ntBASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Gm37714-201ENSMUST00000194742 342 ntBASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 AC114543.1-201ENSMUST00000226451 1558 ntBASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Scaf4Q6PFF0 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Mir8117-201ENSMUST00000184773 107 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Gm45453-201ENSMUST00000211758 853 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Scaf4Q6PFF0 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Gm27631-201ENSMUST00000184163 466 ntBASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Scaf4Q6PFF0 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms