Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gm22189-201ENSMUST00000103822 86 ntBASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Gm6745-201ENSMUST00000199216 526 ntBASIC16.19■□□□□ 0.18
Limch1Q3UH68 AC149294.4-201ENSMUST00000227870 882 ntBASIC16.19■□□□□ 0.18
Limch1Q3UH68 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 AC159196.2-201ENSMUST00000224082 1622 ntBASIC16.19■□□□□ 0.18
Limch1Q3UH68 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Limch1Q3UH68 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Gm23984-201ENSMUST00000157139 203 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Gm8515-201ENSMUST00000194852 576 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC16.18■□□□□ 0.18
Limch1Q3UH68 AC130829.1-201ENSMUST00000221548 494 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Gm6180-201ENSMUST00000065243 498 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Limch1Q3UH68 Ksr1-207ENSMUST00000226282 5260 ntBASIC16.18■□□□□ 0.18
Limch1Q3UH68 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Ighv5-13-201ENSMUST00000193550 290 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 Gm42612-201ENSMUST00000197986 623 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 Gm43170-201ENSMUST00000199827 612 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 AC154806.6-201ENSMUST00000228192 202 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 AC156016.3-201ENSMUST00000228623 344 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Gm15163-201ENSMUST00000120749 1302 ntBASIC16.17■□□□□ 0.18
Limch1Q3UH68 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Limch1Q3UH68 Ldb3-207ENSMUST00000227819 1499 ntBASIC16.16■□□□□ 0.18
Limch1Q3UH68 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms