Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col17a1Q07563 Gm10312-201ENSMUST00000078515 489 ntBASIC20.62■□□□□ 0.89
Col17a1Q07563 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col17a1Q07563 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col17a1Q07563 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm26917-202ENSMUST00000192833 3329 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Dpysl5-202ENSMUST00000101442 1309 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm11451-201ENSMUST00000118946 630 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm22121-201ENSMUST00000175148 54 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm29615-201ENSMUST00000185371 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28224-201ENSMUST00000186078 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm29001-201ENSMUST00000186177 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28292-201ENSMUST00000186593 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28101-201ENSMUST00000187608 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm29076-201ENSMUST00000187689 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28302-201ENSMUST00000187931 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28646-201ENSMUST00000188220 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28205-201ENSMUST00000189177 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm29032-201ENSMUST00000189797 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm28695-201ENSMUST00000190300 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm37448-201ENSMUST00000192795 697 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm42518-201ENSMUST00000196277 938 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC20.61■□□□□ 0.89
Col17a1Q07563 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Gm14780-201ENSMUST00000118387 2737 ntBASIC20.61■□□□□ 0.89
Col17a1Q07563 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC20.61■□□□□ 0.89
Col17a1Q07563 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC20.61■□□□□ 0.89
Col17a1Q07563 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col17a1Q07563 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Gm7278-201ENSMUST00000119836 1401 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Col17a1Q07563 AC096628.2-201ENSMUST00000225443 1413 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Mir1956-201ENSMUST00000157748 65 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 AY036118-201ENSMUST00000200021 923 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 Gm45598-202ENSMUST00000210719 986 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Gm12500-202ENSMUST00000186471 2428 ntBASIC20.6■□□□□ 0.89
Col17a1Q07563 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Col17a1Q07563 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col17a1Q07563 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Gm13549-201ENSMUST00000118339 796 ntBASIC20.59■□□□□ 0.89
Col17a1Q07563 Mup-ps26-201ENSMUST00000121751 202 ntBASIC20.59■□□□□ 0.89
Col17a1Q07563 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC20.59■□□□□ 0.89
Col17a1Q07563 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Gm9132-201ENSMUST00000210182 832 ntBASIC20.59■□□□□ 0.89
Col17a1Q07563 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
Col17a1Q07563 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col17a1Q07563 Gm9387-201ENSMUST00000098624 1320 ntBASIC20.59■□□□□ 0.89
Col17a1Q07563 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col17a1Q07563 Gm12015-201ENSMUST00000117065 843 ntBASIC20.58■□□□□ 0.89
Col17a1Q07563 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col17a1Q07563 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col17a1Q07563 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Col17a1Q07563 Gm5616-201ENSMUST00000165252 384 ntBASIC20.58■□□□□ 0.89
Col17a1Q07563 Gm8741-201ENSMUST00000174736 384 ntBASIC20.58■□□□□ 0.89
Col17a1Q07563 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms