Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Gm13859-201ENSMUST00000119936 1423 ntBASIC11.86□□□□□ -0.51
Nkx3-1P97436 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Nkx3-1P97436 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Ap5m1-205ENSMUST00000227431 3757 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Yif1a-201ENSMUST00000025811 1493 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm13392-201ENSMUST00000117708 150 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm13612-201ENSMUST00000119276 390 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm8062-201ENSMUST00000139696 444 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm3809-201ENSMUST00000180973 1006 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm37424-201ENSMUST00000191727 561 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm9728-201ENSMUST00000200197 1055 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC11.85□□□□□ -0.51
Nkx3-1P97436 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Nkx3-1P97436 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm17420-201ENSMUST00000164753 153 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm29127-201ENSMUST00000188304 517 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm38319-201ENSMUST00000194537 1266 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm42442-201ENSMUST00000197951 1133 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm42550-201ENSMUST00000201553 960 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 AC122459.1-201ENSMUST00000228373 885 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm10012-201ENSMUST00000078252 192 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm10478-201ENSMUST00000084451 396 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 AC126549.2-201ENSMUST00000223997 1976 ntBASIC11.84□□□□□ -0.51
Nkx3-1P97436 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Nkx3-1P97436 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 133.7 ms