Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm11637-201ENSMUST00000120601 592 ntBASIC16.21■□□□□ 0.19
Col3a1P08121 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col3a1P08121 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC16.21■□□□□ 0.19
Col3a1P08121 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Col3a1P08121 Gm43133-201ENSMUST00000197472 463 ntBASIC16.21■□□□□ 0.19
Col3a1P08121 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC16.21■□□□□ 0.19
Col3a1P08121 Gm4935-201ENSMUST00000221316 1198 ntBASIC16.21■□□□□ 0.19
Col3a1P08121 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col3a1P08121 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC16.21■□□□□ 0.19
Col3a1P08121 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col3a1P08121 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Col3a1P08121 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col3a1P08121 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col3a1P08121 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col3a1P08121 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col3a1P08121 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col3a1P08121 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Col3a1P08121 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm12846-201ENSMUST00000120431 1373 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col3a1P08121 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm5940-201ENSMUST00000117582 1068 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm8801-201ENSMUST00000173255 1064 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC16.2■□□□□ 0.18
Col3a1P08121 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Col3a1P08121 Gm7399-201ENSMUST00000032395 858 ntBASIC16.2■□□□□ 0.18
Col3a1P08121 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Col3a1P08121 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
Col3a1P08121 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col3a1P08121 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col3a1P08121 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC16.19■□□□□ 0.18
Col3a1P08121 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Gm25927-201ENSMUST00000175058 117 ntBASIC16.19■□□□□ 0.18
Col3a1P08121 Mir8109-201ENSMUST00000184375 117 ntBASIC16.19■□□□□ 0.18
Col3a1P08121 Gm6013-201ENSMUST00000212264 699 ntBASIC16.19■□□□□ 0.18
Col3a1P08121 Gm10268-201ENSMUST00000085340 555 ntBASIC16.19■□□□□ 0.18
Col3a1P08121 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC16.19■□□□□ 0.18
Col3a1P08121 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.19■□□□□ 0.18
Col3a1P08121 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col3a1P08121 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col3a1P08121 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm12626-201ENSMUST00000117339 1983 ntBASIC16.18■□□□□ 0.18
Col3a1P08121 Gm12623-201ENSMUST00000119849 1983 ntBASIC16.18■□□□□ 0.18
Col3a1P08121 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm11793-201ENSMUST00000120433 981 ntBASIC16.18■□□□□ 0.18
Col3a1P08121 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC16.18■□□□□ 0.18
Col3a1P08121 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC16.18■□□□□ 0.18
Col3a1P08121 CT009713.10-202ENSMUST00000225734 696 ntBASIC16.18■□□□□ 0.18
Col3a1P08121 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Col3a1P08121 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col3a1P08121 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms