Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC14.83□□□□□ -0.04
Vti1aO89116 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Vti1aO89116 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Vti1aO89116 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Vti1aO89116 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Vti1aO89116 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.83□□□□□ -0.04
Vti1aO89116 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Vti1aO89116 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Vti1aO89116 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Vti1aO89116 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Vti1aO89116 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Vti1aO89116 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Vti1aO89116 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.82□□□□□ -0.04
Vti1aO89116 Gm15678-201ENSMUST00000117573 960 ntBASIC14.82□□□□□ -0.04
Vti1aO89116 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC14.82□□□□□ -0.04
Vti1aO89116 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Vti1aO89116 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Vti1aO89116 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
Vti1aO89116 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
Vti1aO89116 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Vti1aO89116 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Vti1aO89116 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Vti1aO89116 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.81□□□□□ -0.04
Vti1aO89116 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.81□□□□□ -0.04
Vti1aO89116 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.81□□□□□ -0.04
Vti1aO89116 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC14.81□□□□□ -0.04
Vti1aO89116 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Gm9899-201ENSMUST00000065519 555 ntBASIC14.81□□□□□ -0.04
Vti1aO89116 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC14.81□□□□□ -0.04
Vti1aO89116 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Vti1aO89116 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Gm9109-201ENSMUST00000120254 1405 ntBASIC14.81□□□□□ -0.04
Vti1aO89116 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.81□□□□□ -0.04
Vti1aO89116 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Vti1aO89116 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vti1aO89116 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Vti1aO89116 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Vti1aO89116 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms