Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Celsr3-201ENSMUST00000024238 11547 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Gm33142-201ENSMUST00000193913 867 ntBASIC11.38□□□□□ -0.59
Hmgb3O54879 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Gm9182-201ENSMUST00000217829 639 ntBASIC11.38□□□□□ -0.59
Hmgb3O54879 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Flna-202ENSMUST00000101454 8345 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Hmgb3O54879 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Hmgb3O54879 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Hmgb3O54879 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Myt1l-201ENSMUST00000021009 5027 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Ntrk2-204ENSMUST00000224259 3049 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm14371-201ENSMUST00000138925 1518 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm14859-201ENSMUST00000117752 357 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC11.37□□□□□ -0.59
Hmgb3O54879 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm17807-201ENSMUST00000186869 298 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC11.37□□□□□ -0.59
Hmgb3O54879 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm14752-201ENSMUST00000120719 2075 ntBASIC11.37□□□□□ -0.59
Hmgb3O54879 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Hmgb3O54879 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC11.37□□□□□ -0.59
Hmgb3O54879 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Hmgb3O54879 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Gm20632-201ENSMUST00000176760 2427 ntBASIC11.36□□□□□ -0.59
Hmgb3O54879 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Hmgb3O54879 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.36□□□□□ -0.59
Hmgb3O54879 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
Hmgb3O54879 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 275.8 ms