Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm23949-201ENSMUST00000104027 127 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm15881-201ENSMUST00000148792 942 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm19640-201ENSMUST00000214849 464 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Gm3318-201ENSMUST00000217604 1183 ntBASIC18.28■□□□□ 0.52
Scn4aQ9ER60 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Scn4aQ9ER60 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Gm14832-201ENSMUST00000121289 322 ntBASIC18.27■□□□□ 0.52
Scn4aQ9ER60 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Gm3793-201ENSMUST00000204973 672 ntBASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Gm9139-201ENSMUST00000218817 700 ntBASIC18.27■□□□□ 0.52
Scn4aQ9ER60 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 5830428M24Rik-204ENSMUST00000223143 1034 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Scn4aQ9ER60 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Gtf2ird1-209ENSMUST00000171794 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Gm43205-201ENSMUST00000198622 1968 ntBASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.51
Scn4aQ9ER60 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Gm15711-201ENSMUST00000118889 535 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Mir1901-201ENSMUST00000122616 78 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Gm19187-201ENSMUST00000206781 892 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Mt1-202ENSMUST00000211807 1085 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 AC129219.2-201ENSMUST00000224324 701 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Agtpbp1-219ENSMUST00000170378 653 ntTSL 3 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 AC154184.3-201ENSMUST00000225620 1090 ntBASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Scn4aQ9ER60 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm5616-201ENSMUST00000165252 384 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm8741-201ENSMUST00000174736 384 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm29615-201ENSMUST00000185371 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28224-201ENSMUST00000186078 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm29001-201ENSMUST00000186177 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28292-201ENSMUST00000186593 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28101-201ENSMUST00000187608 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm29076-201ENSMUST00000187689 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28302-201ENSMUST00000187931 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28646-201ENSMUST00000188220 697 ntBASIC18.25■□□□□ 0.51
Scn4aQ9ER60 Gm28205-201ENSMUST00000189177 697 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms