Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim11Q99PQ2 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim11Q99PQ2 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm15393-201ENSMUST00000120499 219 ntBASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm22175-201ENSMUST00000175007 78 ntBASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm4971-201ENSMUST00000205991 1108 ntBASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gm14752-201ENSMUST00000120719 2075 ntBASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim11Q99PQ2 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gm4804-201ENSMUST00000182234 999 ntBASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 AC154595.3-201ENSMUST00000224579 384 ntBASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC15.69■□□□□ 0.1
Trim11Q99PQ2 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Gm14767-201ENSMUST00000121559 586 ntBASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Gm37277-201ENSMUST00000194052 1111 ntBASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Gm44344-201ENSMUST00000200287 129 ntBASIC15.68■□□□□ 0.1
Trim11Q99PQ2 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Trim11Q99PQ2 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms