Protein–RNA interactions for Protein: Q99LI7

Cstf3, Cleavage stimulation factor subunit 3, mousemouse

Known RBP Predictions only

Length 717 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf3Q99LI7 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gm6415-201ENSMUST00000118488 348 ntBASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gm15653-201ENSMUST00000119247 907 ntBASIC13.34□□□□□ -0.27
Cstf3Q99LI7 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Cstf3Q99LI7 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Cstf3Q99LI7 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Gm44719-201ENSMUST00000206404 149 ntBASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Cstf3Q99LI7 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 AC159196.2-201ENSMUST00000224082 1622 ntBASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Gm6736-201ENSMUST00000166583 948 ntBASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Gm27702-201ENSMUST00000184512 56 ntBASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Gm8396-201ENSMUST00000057361 823 ntBASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cstf3Q99LI7 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms