Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Gm27514-201ENSMUST00000183692 110 ntBASIC18.8■□□□□ 0.6
Usp40Q8BWR4 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Usp40Q8BWR4 Gm10040-201ENSMUST00000080726 1662 ntBASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm5187-201ENSMUST00000117317 991 ntBASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm11400-201ENSMUST00000120853 1214 ntBASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm45331-201ENSMUST00000209868 554 ntBASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Usp40Q8BWR4 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Gm3695-201ENSMUST00000087222 1009 ntBASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Gm45760-201ENSMUST00000212190 1782 ntBASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp40Q8BWR4 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp40Q8BWR4 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Usp40Q8BWR4 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Usp40Q8BWR4 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Usp40Q8BWR4 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms