Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 AC131690.1-201ENSMUST00000218406 374 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm5620-201ENSMUST00000077991 1348 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Usf1Q61069 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Usf1Q61069 Ssr1-204ENSMUST00000225319 1610 ntBASIC12.5□□□□□ -0.41
Usf1Q61069 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Usf1Q61069 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC12.5□□□□□ -0.41
Usf1Q61069 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Usf1Q61069 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 AC115735.4-201ENSMUST00000227460 1944 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Usf1Q61069 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.49□□□□□ -0.41
Usf1Q61069 Olfr284-202ENSMUST00000206647 966 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 Gm9176-201ENSMUST00000219955 1120 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 Cts7-204ENSMUST00000225321 1257 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 Gm2824-203ENSMUST00000226189 1228 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 AC134335.2-201ENSMUST00000227660 440 ntBASIC12.49□□□□□ -0.41
Usf1Q61069 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Usf1Q61069 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
Usf1Q61069 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Usf1Q61069 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Usf1Q61069 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Usf1Q61069 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
Usf1Q61069 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Gm5741-201ENSMUST00000177563 328 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Gm26927-201ENSMUST00000182385 965 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
Usf1Q61069 Gm45865-201ENSMUST00000211815 945 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC12.48□□□□□ -0.41
Usf1Q61069 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC12.48□□□□□ -0.41
Usf1Q61069 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Usf1Q61069 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms