Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Celf5-201ENSMUST00000118763 4391 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Trav5d-4Q5R1F6 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Zkscan14-203ENSMUST00000198959 2243 ntBASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Gm15653-201ENSMUST00000119247 907 ntBASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Trav5d-4Q5R1F6 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm15460-201ENSMUST00000118147 391 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm25144-201ENSMUST00000179561 110 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm25352-201ENSMUST00000179815 110 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm27618-201ENSMUST00000183671 60 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 AC149294.4-201ENSMUST00000227870 882 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 AC156016.3-201ENSMUST00000228623 344 ntBASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Cyp1b1-201ENSMUST00000024894 5128 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Spcs2-201ENSMUST00000036274 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Trav5d-4Q5R1F6 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms